SNP Profiles of LP 4/32 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GG	CC	GG	AC	CG	GG	CT	AG	GG	TT	GG
1._LP_4_/32_[POU]	_	_	AC	GG	CC	_	AC	CG	GG	CT	_	_	TT	_
2._LP_4_/32_[POU]	_	_	AC	GG	CC	_	AC	CG	GG	CT	_	_	TT	_
3._LP_4_/32_[POU]	_	_	AC	GG	CC	_	AC	CG	GG	CT	_	_	TT	_
4._LP_4_/32_[POU]	_	_	AC	GG	CC	_	AC	CG	GG	CT	_	_	TT	_
5._LP_4_/32_[POU]	_	_	AC	GG	CC	_	AC	CG	GG	CT	_	_	TT	_
6._RUQ_883	_	_	AC	GG	CC	_	AC	CG	GG	CT	_	_	TT	_
7._LP_4_/32_[POU]	_	_	AC	GG	CC	_	AC	_	GG	CT	_	_	TT	_
8._GC-07-069-4-05	TT	CC	AC	GG	CC	GG	AC	CG	GG	CT	AG	GG	TT	GG
9._GC-07-081-5-03	TT	CC	AC	GG	CC	GG	AC	CG	GG	CT	AG	GG	TT	GG
10._GC-07-081-5-03	TT	CC	AC	GG	CC	GG	AC	CG	GG	CT	AG	GG	TT	GG
11._GC-07-081-5-03	TT	CC	AC	GG	CC	GG	AC	CG	GG	CT	AG	GG	TT	GG
12._GC-07-081-5-03	TT	CC	AC	GG	CC	GG	AC	CG	GG	CT	AG	GG	TT	GG
13._GC-07-069-4-05	TT	CC	CC	TT	CT	GG	AC	CC	AG	CC	AG	GG	AA	CC
14._LP_4_/32_[POU]	_	_	CC	TT	CT	_	AC	CC	AG	CC	_	_	AA	_
15._RUQ_883	_	_	CC	_	_	_	_	_	AA	_	AG	_	_	_
16._RUQ_883	AA	CC	AC	CC	GG	GG	AC	CG	GG	AG	AG	GG	TT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	GT	CC	CC	CT	CT	TT	GT	AG	GT	CC	CG
1._LP_4_/32_[POU]	AG	CC	CT	GT	CC	CC	_	CT	_	GT	_	_	_	CG
2._LP_4_/32_[POU]	AG	CC	CT	GT	CC	CC	_	CT	_	GT	_	_	_	CG
3._LP_4_/32_[POU]	AG	CC	CT	GT	CC	CC	_	CT	_	GT	_	_	_	CG
4._LP_4_/32_[POU]	AG	CC	CT	GT	CC	CC	_	CT	_	GT	_	_	_	CG
5._LP_4_/32_[POU]	AG	CC	_	GT	CC	CC	_	CT	_	GT	_	_	_	CG
6._RUQ_883	AG	CC	CT	GT	CC	CC	_	CT	_	GT	_	_	_	CG
7._LP_4_/32_[POU]	AG	CC	CT	GT	CC	CC	_	CT	_	GT	_	_	_	CG
8._GC-07-069-4-05	AG	CC	CT	GT	CC	CC	CT	CT	CT	GT	AG	GT	CC	CG
9._GC-07-081-5-03	AG	CC	CT	GT	CC	CC	CT	CT	CT	GT	AG	GT	CC	CG
10._GC-07-081-5-03	AG	CC	CT	GT	CC	CC	CT	CT	CT	GT	AG	GT	CC	CG
11._GC-07-081-5-03	AG	CC	CT	GT	CC	CC	CT	CT	CT	GT	AG	GT	CC	CG
12._GC-07-081-5-03	AG	CC	_	GT	CC	CC	CT	CT	CT	GT	AG	GT	CC	CG
13._GC-07-069-4-05	AA	AC	_	GT	CC	AC	CT	CT	CT	GG	GG	TT	AC	CG
14._LP_4_/32_[POU]	AA	AC	_	GT	CC	AC	_	CT	_	GG	_	_	_	CG
15._RUQ_883	_	AA	_	_	CG	CC	CT	_	CT	GT	AG	_	AC	GG
16._RUQ_883	_	CC	_	AC	CC	CC	AG	AG	_	AC	AG	AC	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	AG	AG	TT	GG	AG	AT	TT	CT	CT	CC	CG	AA
1._LP_4_/32_[POU]	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	CG	AA
2._LP_4_/32_[POU]	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	CG	AA
3._LP_4_/32_[POU]	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	CG	AA
4._LP_4_/32_[POU]	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	CG	AA
5._LP_4_/32_[POU]	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	CG	AA
6._RUQ_883	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	CG	AG
7._LP_4_/32_[POU]	_	CC	_	AG	TT	_	_	_	TT	_	_	CC	GG	AA
8._GC-07-069-4-05	CG	CC	AG	AG	TT	GG	AG	AT	TT	TT	CT	CC	CG	AA
9._GC-07-081-5-03	CG	CC	AG	AG	TT	GG	AG	AT	TT	TT	CT	CC	CG	AA
10._GC-07-081-5-03	CG	CC	AG	AG	TT	GG	AG	AT	TT	TT	CT	CC	CG	AA
11._GC-07-081-5-03	CG	CC	AG	AG	TT	GG	AG	AT	TT	TT	CT	CC	CG	AA
12._GC-07-081-5-03	CG	CC	AG	AG	TT	GG	AG	AT	TT	TT	CT	CC	CG	AA
13._GC-07-069-4-05	CC	CT	AG	AG	CT	GG	GG	TT	GT	_	CT	CC	CG	AA
14._LP_4_/32_[POU]	_	CT	_	AG	CT	_	_	_	GT	_	_	CC	CG	AA
15._RUQ_883	_	_	AG	AA	_	_	_	_	GT	_	_	_	CC	_
16._RUQ_883	_	GG	AG	AG	AA	CC	AG	_	AA	AG	AG	GG	CC	AA

Input profile: LP_4_/32_[POU] RUQ_883

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LP_4_/32_[POU]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 3 > FP

Dapeng Zhang, 2016

2._LP_4_/32_[POU]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 4

Dapeng Zhang, 2016

3._LP_4_/32_[POU]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 1

Dapeng Zhang, 2016

4._LP_4_/32_[POU]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._LP_4_/32_[POU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 2

Dapeng Zhang, 2016

6._LP_4_/32_[POU] RUQ_883

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._LP_4_/32_[POU]

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C752

Dapeng Zhang, 2016

8._LP_4_/32_[POU] GC-07-069-4-05

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

9._LP_4_/32_[POU] GC-07-081-5-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._LP_4_/32_[POU] GC-07-081-5-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

11._LP_4_/32_[POU] GC-07-081-5-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._LP_4_/32_[POU] GC-07-081-5-03

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._LP_4_/32_[POU] GC-07-069-4-05

68.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

14._LP_4_/32_[POU]

65.2 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 3 > FP

Dapeng Zhang, 2016

15._LP_4_/32_[POU] RUQ_883

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

16._LP_4_/32_[POU] RUQ_883

52.7 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484